Package: phylotate 1.3
phylotate: Phylogenies with Annotations
Functions to read and write APE-compatible phylogenetic trees in NEXUS and Newick formats, while preserving annotations.
Authors:
phylotate_1.3.tar.gz
phylotate_1.3.zip(r-4.5)phylotate_1.3.zip(r-4.4)phylotate_1.3.zip(r-4.3)
phylotate_1.3.tgz(r-4.4-any)phylotate_1.3.tgz(r-4.3-any)
phylotate_1.3.tar.gz(r-4.5-noble)phylotate_1.3.tar.gz(r-4.4-noble)
phylotate_1.3.tgz(r-4.4-emscripten)phylotate_1.3.tgz(r-4.3-emscripten)
phylotate.pdf |phylotate.html✨
phylotate/json (API)
NEWS
| # Install 'phylotate' in R: |
| install.packages('phylotate', repos = c('https://dlbeer.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- finches - NEXUS data example
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:4d3c3e4bdd. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 01 2024 |
| R-4.5-win | OK | Nov 01 2024 |
| R-4.5-linux | OK | Nov 01 2024 |
| R-4.4-win | OK | Nov 01 2024 |
| R-4.4-mac | OK | Nov 01 2024 |
| R-4.3-win | OK | Nov 01 2024 |
| R-4.3-mac | OK | Nov 01 2024 |
Exports:mb_attrsparse_annotatedprint_annotatedread_annotatedwrite_annotated
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Phylogenies with Annotations | phylotate-package phylotate |
| NEXUS data example | finches |
| Parse MrBayes-supplied attributes from a NEXUS file | mb_attrs |
| Parse an annotated phylogenetic tree | parse_annotated |
| Serialize an annotated phylogenetic tree | print_annotated |
| Read an annotated phylogenetic tree | read_annotated |
| Write an annotated phylogenetic tree to a file | write_annotated |
