Package: phylotate 1.3
phylotate: Phylogenies with Annotations
Functions to read and write APE-compatible phylogenetic trees in NEXUS and Newick formats, while preserving annotations.
Authors:
phylotate_1.3.tar.gz
phylotate_1.3.zip(r-4.7-any)phylotate_1.3.zip(r-4.6-any)phylotate_1.3.zip(r-4.5-any)
phylotate_1.3.tgz(r-4.6-any)phylotate_1.3.tgz(r-4.5-any)
phylotate_1.3.tar.gz(r-4.7-any)phylotate_1.3.tar.gz(r-4.6-any)
phylotate_1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
phylotate/json (API)
| # Install 'phylotate' in R: |
| install.packages('phylotate', repos = c('https://dlbeer.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- finches - NEXUS data example
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:4d3c3e4bdd. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 93 | ||
| source / vignettes | OK | 162 | ||
| linux-release | OK | 90 | ||
| macos-release | OK | 142 | ||
| macos-oldrel | OK | 174 | ||
| windows-devel | OK | 62 | ||
| windows-release | OK | 63 | ||
| windows-oldrel | OK | 54 | ||
| wasm-release | OK | 64 |
Exports:mb_attrsparse_annotatedprint_annotatedread_annotatedwrite_annotated
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Phylogenies with Annotations | phylotate-package phylotate |
| NEXUS data example | finches |
| Parse MrBayes-supplied attributes from a NEXUS file | mb_attrs |
| Parse an annotated phylogenetic tree | parse_annotated |
| Serialize an annotated phylogenetic tree | print_annotated |
| Read an annotated phylogenetic tree | read_annotated |
| Write an annotated phylogenetic tree to a file | write_annotated |
